UCSC DNA Sequence Result

Schema for a DNA sequence response from the UCSC Genome Browser API.

GenomicsBioinformaticsDNABiologyResearchOpen Science

Properties

Name	Type	Description
genome	string	Genome assembly identifier (e.g., hg38, mm39).
chrom	string	Chromosome identifier (e.g., chr1, chrM).
start	integer	Start position (0-based, half-open coordinates).
end	integer	End position (1-based, half-open coordinates).
dna	string	DNA sequence string (IUPAC nucleotide characters).

View JSON Schema on GitHub

JSON Schema

{
  "$schema": "http://json-schema.org/draft-07/schema#",
  "$id": "https://github.com/api-evangelist/ucsc-genomic-data/blob/main/json-schema/ucsc-genomic-data-sequence-schema.json",
  "title": "UCSC DNA Sequence Result",
  "description": "Schema for a DNA sequence response from the UCSC Genome Browser API.",
  "type": "object",
  "required": ["genome", "chrom", "dna"],
  "properties": {
    "genome": {
      "type": "string",
      "description": "Genome assembly identifier (e.g., hg38, mm39)."
    },
    "chrom": {
      "type": "string",
      "description": "Chromosome identifier (e.g., chr1, chrM)."
    },
    "start": {
      "type": "integer",
      "minimum": 0,
      "description": "Start position (0-based, half-open coordinates)."
    },
    "end": {
      "type": "integer",
      "minimum": 1,
      "description": "End position (1-based, half-open coordinates)."
    },
    "dna": {
      "type": "string",
      "pattern": "^[acgtACGTnN]*$",
      "description": "DNA sequence string (IUPAC nucleotide characters)."
    }
  }
}