v2TaxonomyNode

Schema for v2TaxonomyNode

BioinformaticsGenomicsLife SciencesPubMedSequencesBLASTTaxonomyChemistryOpen Access

Properties

Name Type Description
tax_id integer
organism_name string
common_name string
genbank_common_name string
acronyms array
genbank_acronym string
blast_name string
lineage array
children array
descendent_with_described_species_names_count integer
rank object
has_described_species_name boolean
counts array
min_ord integer
max_ord integer
extinct boolean
genomic_moltype string
View JSON Schema on GitHub

JSON Schema

v2TaxonomyNode.json Raw ↑
{
  "$schema": "http://json-schema.org/draft-07/schema#",
  "$id": "https://kinlane.github.io/ncbi/json-schema/v2TaxonomyNode.json",
  "title": "v2TaxonomyNode",
  "description": "Schema for v2TaxonomyNode",
  "type": "object",
  "properties": {
    "tax_id": {
      "type": "integer",
      "title": "NCBI Taxonomy identifier"
    },
    "organism_name": {
      "type": "string",
      "title": "Scientific name"
    },
    "common_name": {
      "type": "string",
      "title": "Common name"
    },
    "genbank_common_name": {
      "type": "string",
      "title": "GenBank common name"
    },
    "acronyms": {
      "type": "array",
      "items": {
        "type": "string"
      }
    },
    "genbank_acronym": {
      "type": "string",
      "title": "GenBank acronym"
    },
    "blast_name": {
      "type": "string",
      "title": "blast name for organism"
    },
    "lineage": {
      "type": "array",
      "items": {
        "type": "integer"
      }
    },
    "children": {
      "type": "array",
      "items": {
        "type": "integer"
      }
    },
    "descendent_with_described_species_names_count": {
      "type": "integer",
      "title": "The number of descendants (grand total) that are specified."
    },
    "rank": {
      "$ref": "#/components/schemas/v2reportsRankType",
      "title": "The rank of the organism.  An enumerated set of values."
    },
    "has_described_species_name": {
      "type": "boolean",
      "title": "If the taxonomy node has a proper species name"
    },
    "counts": {
      "type": "array",
      "items": {
        "$ref": "#/components/schemas/v2TaxonomyNodeCountByType"
      }
    },
    "min_ord": {
      "type": "integer",
      "title": "ordinal values for any node are the full range of the ordinal values in the subtree underneath this node, and are used for faster range-based lookups"
    },
    "max_ord": {
      "type": "integer"
    },
    "extinct": {
      "type": "boolean",
      "title": "True if organism is extinct"
    },
    "genomic_moltype": {
      "type": "string",
      "title": "genomic molecule type (dsDNA, ssDNA, ssDNA(-), ssRNA)"
    }
  }
}