Benchling · Schema
Translation
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JSON Schema
{
"$schema": "https://json-schema.org/draft/2020-12/schema",
"$id": "https://api-evangelist.github.io/benchling/json-schema/Translation.json",
"title": "Translation",
"allOf": [
{
"$ref": "#/components/schemas/SequenceFeatureBase"
},
{
"properties": {
"aminoAcids": {
"readOnly": true,
"type": "string"
},
"coerceStartCodonToMethionine": {
"default": false,
"description": "Whether to override the translation of the start codon to Methionine. Has no effect when the start codon already translates to Methionine.",
"type": "boolean"
},
"end": {
"description": "0-based exclusive end index. The end of the sequence is always represented as 0.",
"type": "integer"
},
"geneticCode": {
"default": "STANDARD",
"description": "The genetic code to use when translating the nucleotide sequence into amino acids.",
"enum": [
"STANDARD",
"VERTEBRATE_MITOCHONDRIAL",
"YEAST_MITOCHONDRIAL",
"MOLD_PROTOZOAN_COELENTERATE_MITOCHONDRIAL_MYCOPLASMA_SPIROPLASMA",
"INVERTEBRATE_MITOCHONDRIAL",
"CILIATE_DASYCLADACEAN_HEXAMITA_NUCLEAR",
"ECHINODERM_FLATWORM_MITOCHONDRIAL",
"EUPLOTID_NUCLEAR",
"BACTERIAL_ARCHAEAL_PLANT_PLASTID",
"ALTERNATIVE_YEAST_NUCLEAR",
"ASCIDIAN_MITOCHONDRIAL",
"ALTERNATIVE_FLATWORM_MITOCHONDRIAL",
"CHLOROPHYCEAN_MITOCHONDRIAL",
"TREMATODE_MITOCHONDRIAL",
"SCENEDESMUS_OBLIQUUS_MITOCHONDRIAL",
"THRAUSTOCHYTRIUM_MITOCHONDRIAL",
"RHABDOPLEURIDAE_MITOCHONDRIAL",
"CANDIDATE_DIVISION_SR1_GRACILIBACTERIA",
"PACHYSOLEN_TANNOPHILUS_NUCLEAR",
"MESODINIUM_NUCLEAR",
"PERITRICH_NUCLEAR",
"CEPHALODISCIDAE_MITOCHONDRIAL_UAA_TYR"
],
"type": "string"
},
"regions": {
"items": {
"properties": {
"end": {
"description": "0-based exclusive end index. The end of the sequence is always represented as 0.",
"type": "integer"
},
"start": {
"description": "0-based inclusive start index.",
"type": "integer"
}
},
"type": "object"
},
"type": "array"
},
"start": {
"description": "0-based inclusive start index.",
"type": "integer"
},
"strand": {
"example": 1,
"type": "integer"
}
},
"type": "object"
}
]
}