Benchling · Schema

ReducedPattern

DNA patterns to avoid during optimization. Supports two formats: 1) DNA base patterns: strings of ATGC bases (case-insensitive, e.g., "ATGC" or "gat") 2) Repeat patterns: format "nxkmer" specifying n repeats of k-sized sequences (e.g., "3x4mer" matches 3 consecutive 4-base repeats). Maximum total length for repeat patterns is 50 bases (n * k ≤ 50). If avoidReverseComplement is true, the pattern's reverse complement will also be avoided. Note: avoidReverseComplement cannot be true for repeat patterns (nxkmer format).

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Properties

Name	Type	Description
avoidReverseComplement	boolean
pattern	string

View JSON Schema on GitHub

JSON Schema

{
  "$schema": "https://json-schema.org/draft/2020-12/schema",
  "$id": "https://api-evangelist.github.io/benchling/json-schema/ReducedPattern.json",
  "title": "ReducedPattern",
  "additionalProperties": false,
  "description": "DNA patterns to avoid during optimization. Supports two formats: 1) DNA base patterns: strings of ATGC bases (case-insensitive, e.g., \"ATGC\" or \"gat\") 2) Repeat patterns: format \"nxkmer\" specifying n repeats of k-sized sequences (e.g., \"3x4mer\" matches 3 consecutive 4-base repeats). Maximum total length for repeat patterns is 50 bases (n * k \u2264 50).\nIf avoidReverseComplement is true, the pattern's reverse complement will also be avoided. Note: avoidReverseComplement cannot be true for repeat patterns (nxkmer format).\n",
  "properties": {
    "avoidReverseComplement": {
      "default": false,
      "type": "boolean"
    },
    "pattern": {
      "type": "string"
    }
  },
  "type": "object"
}