Benchling · Schema

Monomer

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Properties

Name	Type	Description
archiveRecord	object
attachmentPoints	array	A list of the capping group present at each location where the monomer can form a bond with other monomers
calculatedMolecularWeight	number	The molecular weight of the monomer as calculated by RDKit based on the monomer chemical structure
canonicalSmiles	string	The canonicalized chemical structure in SMILES format.
createdAt	string	DateTime the monomer was created.
customMolecularWeight	number	Optional molecular weight value that the user can provide to override the calculated molecular weight
exactMolecularWeight	number	The exact molecular weight of the monomer as calculated by RDKit based on the monomer chemical structure
id	string	ID of the monomer
modifiedAt	string	DateTime the monomer was last modified.
monomerType	object
name	string	Name of the monomer
naturalAnalog	string	Symbol for the natural equivalent of the monomer. Acceptable natural analog values include IUPAC bases, r, and p.
originalSmiles	string	The original chemical structure supplied by the user in SMILES format. Null if the user did not originally supply SMILES.
polymerType	object
symbol	string	User-defined identifier of the monomer, unique on the monomer type.
visualColor	string	The hex color code of the monomer visual symbol
visualSymbol	object

View JSON Schema on GitHub

JSON Schema

{
  "$schema": "https://json-schema.org/draft/2020-12/schema",
  "$id": "https://api-evangelist.github.io/benchling/json-schema/Monomer.json",
  "title": "Monomer",
  "properties": {
    "archiveRecord": {
      "allOf": [
        {
          "$ref": "#/components/schemas/ArchiveRecord"
        }
      ],
      "nullable": true
    },
    "attachmentPoints": {
      "description": "A list of the capping group present at each location where the monomer can form a bond with other monomers",
      "example": [
        "OH",
        "OH"
      ],
      "items": {
        "type": "string"
      },
      "type": "array"
    },
    "calculatedMolecularWeight": {
      "description": "The molecular weight of the monomer as calculated by RDKit based on the monomer chemical structure",
      "example": 120.422,
      "type": "number"
    },
    "canonicalSmiles": {
      "description": "The canonicalized chemical structure in SMILES format.",
      "example": "O[P@@](=S)([OH:1])[OH:2]",
      "type": "string"
    },
    "createdAt": {
      "description": "DateTime the monomer was created.",
      "format": "date-time",
      "readOnly": true,
      "type": "string"
    },
    "customMolecularWeight": {
      "description": "Optional molecular weight value that the user can provide to override the calculated molecular weight",
      "example": 119.422,
      "nullable": true,
      "type": "number"
    },
    "exactMolecularWeight": {
      "description": "The exact molecular weight of the monomer as calculated by RDKit based on the monomer chemical structure",
      "example": 119.422,
      "type": "number"
    },
    "id": {
      "description": "ID of the monomer",
      "example": "mon_bhuDUw9D",
      "type": "string"
    },
    "modifiedAt": {
      "description": "DateTime the monomer was last modified.",
      "format": "date-time",
      "readOnly": true,
      "type": "string"
    },
    "monomerType": {
      "allOf": [
        {
          "$ref": "#/components/schemas/MonomerType"
        }
      ]
    },
    "name": {
      "description": "Name of the monomer",
      "example": "(Rp)-Phosphorothioate",
      "type": "string"
    },
    "naturalAnalog": {
      "description": "Symbol for the natural equivalent of the monomer. Acceptable natural analog values include IUPAC bases, r, and p.",
      "example": "T",
      "type": "string"
    },
    "originalSmiles": {
      "description": "The original chemical structure supplied by the user in SMILES format. Null if the user did not originally supply SMILES.",
      "example": "O[P@@](=S)([OH:1])[OH:2]",
      "nullable": true,
      "type": "string"
    },
    "polymerType": {
      "allOf": [
        {
          "$ref": "#/components/schemas/MonomerPolymerType"
        }
      ]
    },
    "symbol": {
      "description": "User-defined identifier of the monomer, unique on the monomer type.",
      "example": "Rsp",
      "type": "string"
    },
    "visualColor": {
      "description": "The hex color code of the monomer visual symbol",
      "example": "#7051FC",
      "nullable": true,
      "type": "string"
    },
    "visualSymbol": {
      "allOf": [
        {
          "$ref": "#/components/schemas/MonomerVisualSymbol"
        }
      ],
      "nullable": true
    }
  },
  "type": "object"
}