Benchling · Schema

AlignedSequence

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Properties

Name	Type	Description
bases	string
dnaSequenceId	string
name	string
pairwiseIdentity	number	Fraction of bases between trimStart and trimEnd that match the template bases. Only present for Template Alignments; Will be empty for Consensus Alignments.
sequenceId	string
trimEnd	integer
trimStart	integer

View JSON Schema on GitHub

JSON Schema

{
  "$schema": "https://json-schema.org/draft/2020-12/schema",
  "$id": "https://api-evangelist.github.io/benchling/json-schema/AlignedSequence.json",
  "title": "AlignedSequence",
  "properties": {
    "bases": {
      "example": "GTAGCAAAGANTAGTAGCCAGCTGTGATAAATGTCAGCTAAAAGGGGAAGCCATG",
      "type": "string"
    },
    "dnaSequenceId": {
      "deprecated": true,
      "example": "seq_MYmsnS1u",
      "nullable": true,
      "type": "string"
    },
    "name": {
      "example": "Gene001",
      "type": "string"
    },
    "pairwiseIdentity": {
      "description": "Fraction of bases between trimStart and trimEnd that match the template bases. Only present for Template Alignments; Will be empty for Consensus Alignments.\n",
      "example": 0.505,
      "format": "float",
      "type": "number"
    },
    "sequenceId": {
      "example": "seq_MYmsnS1u",
      "nullable": true,
      "type": "string"
    },
    "trimEnd": {
      "example": 60,
      "type": "integer"
    },
    "trimStart": {
      "example": 0,
      "type": "integer"
    }
  },
  "type": "object"
}